External resources¶
Contents
Model Architectures¶
Sunyoung Kwon, Sungroh Yoon: DeepCCI: End-to-end Deep Learning for Chemical-Chemical Interaction Prediction
Jae Yong Ryu, Hyun Uk Kim, and Yup Lee: Deep Learning Improves Prediction of Drug–Drug and Drug–Food Interactions, Code (kaistsystemsbiology/deepddi)
Kristina Preuer, Richard Lewis, Sepp Hochreiter, Andreas Bender, Krishna C Bulusu, Günter Klambauer: DeepSynergy: Predicting Anti-Cancer Drug Synergy with Deep Learning, Code (KristinaPreuer/DeepSynergy)
Nuo Xu, Pinghui Wang, Long Chen, Jing Tao, Junzhou Zhao: MR-GNN: Multi-Resolution and Dual Graph Neural Network for Predicting Structured Entity Interactions, Code
Andreea Deac, Yu-Hsiang Huang, Petar Veličković, Pietro Liò, Jian Tang: Drug-Drug Adverse Effect Prediction with Graph Co-Attention
Kexin Huang, Cao Xiao, Trong Nghia Hoang, Lucas M. Glass, Jimeng Sun: CASTER: Predicting Drug Interactions with Chemical Substructure Representation, Code (kexinhuang12345/CASTER)
Arnold K Nyamabo, Hui Yu, Jian-Yu Shi: SSI–DDI: Substructure–Substructure Interactions for Drug–Drug Interaction Prediction, Code (kanz76/SSI-DD)
Mengying Sun, Fei Wang, Olivier Elemento, Jiayu Zhou: Structure-Based Drug-Drug Interaction Detection via Expressive Graph Convolutional Networks and Deep Sets
Tianyu Zhang, Liwei Zhang, Philip Payne, Fuhai Li: Synergistic Drug Combination Prediction by Integrating Multiomics Data in Deep Learning Models
Xusheng Cao, Rui Fan, Wanwen Zeng: DeepDrug: A General Graph-Based Deep Learning Framework for Drug Relation Prediction, Code (wanwenzeng/deepdrug)
Xin Chen, Xien Liu, Ji Wuab: GCN-BMP: Investigating Graph Representation Learning for DDI Prediction Task,
Yue-Hua Feng, Shao-Wu Zhang, Jian-Yu Shi: DPDDI: a Deep Predictor for Drug-Drug Interactions, Code (NWPU-903PR/DPDDI)
Jinxian Wang, Xuejun Liu, Siyuan Shen, Lei Deng, Hui Liu: DeepDDS: Deep Graph Neural Network with Attention Mechanism to Predict Synergistic Drug Combinations, Code (Sinwang404/DeepDDS)
Halil Ibrahim Kuru, Oznur Tastan, Ercument Cicek: MatchMaker: A Deep Learning Framework for Drug Synergy Prediction, Code (tastanlab/matchmaker)
Hui Yu, ShiYu Zhao, JianYu Shi: STNN-DDI: A Substructure-aware Tensor Neural Network to Predict Drug-Drug Interactions, Code (zsy-9/STNN-DDI)